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	<title>Sphaerula &#187; evolution</title>
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	<description>by Conrad Halling</description>
	<lastBuildDate>Wed, 20 Jul 2011 01:11:33 +0000</lastBuildDate>
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		<title>Understanding Evolutionary Trees</title>
		<link>http://sphaerula.com/wordpress/biology/understanding-evolutionary-trees/</link>
		<comments>http://sphaerula.com/wordpress/biology/understanding-evolutionary-trees/#comments</comments>
		<pubDate>Sun, 16 Mar 2008 22:16:13 +0000</pubDate>
		<dc:creator>Conrad Halling</dc:creator>
				<category><![CDATA[Biology]]></category>
		<category><![CDATA[evolution]]></category>
		<category><![CDATA[phylogeny]]></category>
		<category><![CDATA[Science]]></category>

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		<description><![CDATA[Today I read “Understanding Evolutionary Trees”, by T. Ryan Gregory, the author of the Genomicron blog. Dr. Gregory mentioned his paper in his blog post, “Evolutionary Trees for Darwin Day”, and the paper appears in the new journal Evolution: Education &#8230; <a href="http://sphaerula.com/wordpress/biology/understanding-evolutionary-trees/">Continue reading <span class="meta-nav">&#8594;</span></a>]]></description>
			<content:encoded><![CDATA[<p>Today I read <a href="http://www.springerlink.com/content/v41w288751r82653/fulltext.pdf" target="_blank">“Understanding Evolutionary Trees”</a>, by T. Ryan Gregory, the author of the <a href="http://genomicron.blogspot.com/" target="_blank">Genomicron</a> blog. Dr. Gregory mentioned his paper in his blog post, <a href="http://genomicron.blogspot.com/2008/02/evolutionary-trees-for-darwin-day.html" target="_blank">“Evolutionary Trees for Darwin Day”</a>, and the paper appears in the new journal <a href="http://www.springer.com/life+sci/journal/12052"><em>Evolution: Education and Outreach</em></a>, which is free online through 2008.</p>
<p><a href="http://nimravid.wordpress.com/" target="_blank">Nimravid</a> posted a <a href="http://nimravid.wordpress.com/2008/03/15/understanding-evolutionary-trees/" target="_blank">summary</a>, which was <a href="http://genomicron.blogspot.com/2008/03/nimravid-on-evolutionary-trees.html" target="_blank">graciously acknowledged</a> today by Dr. Gregory, and that was how I learned about the paper. Nimravid’s summary is good (as are all of Nimravid’s posts), but I recommend reading the entire paper, which is very readable and well-presented. I found that I have a pretty clear idea of how to interpret evolutionary trees, but I learned the differences in the terms <em>dendrogram</em>, <em>cladogram</em>, and <em>phylogram</em>.</p>
<p>Dr. Gregory makes an important point in his paper:</p>
<blockquote><p>[I]t is impossible to know with certainty that any given phylogeny is historically accurate. As a result, any reconstructed phylogenetic tree is a hypothesis about relationships and patterns of branching and thus is subject to further testing and revision with the analysis of additional data.</p></blockquote>
<p>In my mind, this is why evolution is a science. An evolutionary tree is a model of the evolutionary relationships among organisms. A good model is consistent with existing observations, and it provides a hypothesis than can be tested as additional data are gathered. If the model is inconsistent with the new data, the model is revised and subjected to testing with even more data.</p>
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